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Synpr synaptoporin [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103729429, updated on 11-Mar-2024

Summary

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Gene symbol
Synpr
Gene description
synaptoporin
See related
Ensembl:ENSNGAG00000012667
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008332583.1 (378178..749676, complement)

NW_008332583.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DDX18-like Neighboring gene sentan, cilia apical structure protein Neighboring gene U6 spliceosomal RNA Neighboring gene ubiquitin carboxyl-terminal hydrolase 10 pseudogene Neighboring gene calcium dependent secretion activator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008332583 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptoporin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008332583.1 Reference S.galili_v1.0 Primary Assembly

    Range
    378178..749676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008827500.3 → XP_008825722.1  synaptoporin isoform X1

    UniProtKB/TrEMBL
    A0A8C6QWR6
    Conserved Domains (1) summary
    pfam01284
    Location:15 → 216
    MARVEL; Membrane-associating domain

  2. XM_008827501.3 → XP_008825723.1  synaptoporin isoform X2

    UniProtKB/TrEMBL
    A0A8C6QWR6, A0A8C6QXV6
    Related
    ENSNGAP00000010178.1, ENSNGAT00000015701.1
    Conserved Domains (1) summary
    pfam01284
    Location:69 → 196
    MARVEL; Membrane-associating domain
Nucleotide Protein
Heading Accession and Version

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