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CLDN18 claudin 18 [ Ursus maritimus (polar bear) ]

Gene ID: 103678739, updated on 11-Mar-2024

Summary

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Gene symbol
CLDN18
Gene description
claudin 18
See related
Ensembl:ENSUMAG00000015027
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424453.1 (24742597..24768899, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907045.1 (20964474..20990627, complement)

NW_024424453.1Genomic Context describing neighboring genes Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase Neighboring gene DAZ interacting zinc finger protein 1 like Neighboring gene SRY-box transcription factor 14 Neighboring gene NHP2-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424453.1 Reference ASM1731132v1 Primary Assembly

    Range
    24742597..24768899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008708140.1 → XP_008706362.1  claudin-18 isoform X2

    UniProtKB/TrEMBL
    A0A384DH58
    Related
    ENSUMAP00000020517.1, ENSUMAT00000024304.1
    Conserved Domains (1) summary
    cl21598
    Location:9 → 191
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_040636586.1 → XP_040492520.1  claudin-18 isoform X1

    UniProtKB/TrEMBL
    A0A8M1GCB3
    Conserved Domains (1) summary
    cl21598
    Location:7 → 191
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
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Gene LinkOut

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