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ATG3 autophagy related 3 [ Ursus maritimus (polar bear) ]

Gene ID: 103677317, updated on 11-Mar-2024

Summary

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Gene symbol
ATG3
Gene description
autophagy related 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See ATG3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024426552.1 (56294216..56321820, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907274.1 (989805..1013447)

NW_024426552.1Genomic Context describing neighboring genes Neighboring gene CD200 molecule Neighboring gene B and T lymphocyte associated Neighboring gene solute carrier family 35 member A5 Neighboring gene coiled-coil domain containing 80

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Atg8-family ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-like-conjugating enzyme ATG3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024426552.1 Reference ASM1731132v1 Primary Assembly

    Range
    56294216..56321820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040621234.1 → XP_040477168.1  ubiquitin-like-conjugating enzyme ATG3

    UniProtKB/TrEMBL
    A0A8M1F180
    Conserved Domains (2) summary
    pfam03986
    Location:8 → 135
    Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
    pfam03987
    Location:38 → 308
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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