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COL10A1 collagen type X alpha 1 chain [ Ursus maritimus (polar bear) ]

Gene ID: 103663476, updated on 11-Mar-2024

Summary

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Gene symbol
COL10A1
Gene description
collagen type X alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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See COL10A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024423675.1 (25957808..25964629, complement)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907119.1 (20957056..20963789)

NW_024423675.1Genomic Context describing neighboring genes Neighboring gene fyn related Src family tyrosine kinase Neighboring gene 60S ribosomal protein L12-like Neighboring gene 5'-nucleotidase domain containing 1 Neighboring gene U5 spliceosomal RNA Neighboring gene uncharacterized LOC121102267

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(X) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024423675.1 Reference ASM1731132v1 Primary Assembly

    Range
    25957808..25964629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008691193.2 → XP_008689415.2  collagen alpha-1(X) chain

    UniProtKB/TrEMBL
    A0A384C4U7, A0A452TAU9
    Conserved Domains (2) summary
    smart00110
    Location:539 → 674
    C1Q; Complement component C1q domain
    PRK07764
    Location:265 → 421
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
Nucleotide Protein
Heading Accession and Version

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