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COL28A1 collagen type XXVIII alpha 1 chain [ Galeopterus variegatus (Sunda flying lemur) ]

Gene ID: 103588242, updated on 11-Mar-2024

Summary

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Gene symbol
COL28A1
Gene description
collagen type XXVIII alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Galeopterus variegatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Dermoptera; Cynocephalidae; Galeopterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current G_variegatus-3.0.2 (GCF_000696425.1) Unplaced Scaffold NW_007726649.1 (399922..572196, complement)

NW_007726649.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B2-like Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007726649 unplaced scaffold reference G_variegatus-3.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(XXVIII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Galeopterus variegatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference G_variegatus-3.0.2 Primary Assembly

Genomic

  1. NW_007726649.1 Reference G_variegatus-3.0.2 Primary Assembly

    Range
    399922..572196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008569867.1 → XP_008568089.1  collagen alpha-1(XXVIII) chain

    See identical proteins and their annotated locations for XP_008568089.1

    Conserved Domains (4) summary
    pfam01391
    Location:383 → 445
    Collagen; Collagen triple helix repeat (20 copies)
    cd00109
    Location:1071 → 1124
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:47 → 209
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:799 → 974
    VWA; von Willebrand factor type A domain

  2. XM_008569866.1 → XP_008568088.1  collagen alpha-1(XXVIII) chain

    See identical proteins and their annotated locations for XP_008568088.1

    Conserved Domains (4) summary
    pfam01391
    Location:383 → 445
    Collagen; Collagen triple helix repeat (20 copies)
    cd00109
    Location:1071 → 1124
    KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
    cd01450
    Location:47 → 209
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam00092
    Location:799 → 974
    VWA; von Willebrand factor type A domain
Nucleotide Protein
Heading Accession and Version

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