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XRN1 5'-3' exoribonuclease 1 [ Equus przewalskii (Przewalski's horse) ]

Gene ID: 103541058, updated on 11-Mar-2024

Summary

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Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus przewalskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
42
Annotation release Status Assembly Chr Location
100 current Burgud (GCF_000696695.1) Unplaced Scaffold NW_007673138.1 (1420000..1538502)

NW_007673138.1Genomic Context describing neighboring genes Neighboring gene plastin 1 Neighboring gene ATR serine/threonine kinase Neighboring gene glycerol kinase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007673138 unplaced scaffold reference Burgud Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus przewalskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Burgud Primary Assembly

Genomic

  1. NW_007673138.1 Reference Burgud Primary Assembly

    Range
    1420000..1538502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008507803.1 → XP_008506025.1  5'-3' exoribonuclease 1 isoform X4

    Conserved Domains (2) summary
    COG5049
    Location:1 → 735
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1 → 226
    XRN_N; XRN 5'-3' exonuclease N-terminus

  2. XM_008507796.1 → XP_008506018.1  5'-3' exoribonuclease 1 isoform X3

    Conserved Domains (2) summary
    COG5049
    Location:1 → 735
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1 → 226
    XRN_N; XRN 5'-3' exonuclease N-terminus

  3. XM_008507778.1 → XP_008506000.1  5'-3' exoribonuclease 1 isoform X1

    Conserved Domains (2) summary
    COG5049
    Location:1 → 735
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1 → 226
    XRN_N; XRN 5'-3' exonuclease N-terminus

  4. XM_008507789.1 → XP_008506011.1  5'-3' exoribonuclease 1 isoform X2

    Conserved Domains (2) summary
    COG5049
    Location:1 → 735
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1 → 226
    XRN_N; XRN 5'-3' exonuclease N-terminus

  5. XM_008507806.1 → XP_008506028.1  5'-3' exoribonuclease 1 isoform X5

    Conserved Domains (1) summary
    COG5049
    Location:94 → 422
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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