U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103537126, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LSM5
Gene description
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Locus tag
N300_04794
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 2 NC_044245.1 (48867512..48872797, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007622244.1 (1402950..1414848, complement)

Chromosome 2 - NC_044245.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene phosphodiesterase 1C Neighboring gene uncharacterized LOC115597874 Neighboring gene AVL9 cell migration associated

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U6 snRNA-associated Sm-like protein LSm5
Names
U6 snRNA-associated Sm-like LSm5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044245.1 Reference bCalAnn1_v1.p

    Range
    48867512..48872797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030445543.1 → XP_030301403.1  U6 snRNA-associated Sm-like protein LSm5

    Conserved Domains (1) summary
    cd01732
    Location:11 → 86
    LSm5; Like-Sm protein 5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.