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lgi1b leucine-rich, glioma inactivated 1b [ Poecilia reticulata (guppy) ]

Gene ID: 103481303, updated on 11-Mar-2024

Summary

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Gene symbol
lgi1b
Gene description
leucine-rich, glioma inactivated 1b
See related
Ensembl:ENSPREG00000022755
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
lgi1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
10
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG19 NC_024349.1 (7000400..7012792)

Linkage Group LG19 - NC_024349.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6C, cGMP-specific, cone, alpha prime Neighboring gene FRA10A associated CGG repeat 1 Neighboring gene solute carrier family 35 member G1 Neighboring gene phospholipase C, epsilon 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024349.1 Chromosome LG19 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in myelination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich glioma-inactivated protein 1
Names
leucine rich glioma inactivated 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024349.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    7000400..7012792
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008436704.2 → XP_008434926.1  leucine-rich glioma-inactivated protein 1

    UniProtKB/TrEMBL
    A0A3P9QHH1
    Related
    ENSPREP00000033571.1, ENSPRET00000033950.1
    Conserved Domains (5) summary
    smart00082
    Location:167 → 215
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:87 → 110
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:311 → 357
    EPTP; EPTP domain
    pfam12799
    Location:110 → 149
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:110 → 169
    LRR_8; Leucine rich repeat
Nucleotide Protein
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