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nop2 NOP2 nucleolar protein homolog (yeast) [ Poecilia reticulata (guppy) ]

Gene ID: 103478014, updated on 11-Mar-2024

Summary

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Gene symbol
nop2
Gene description
NOP2 nucleolar protein homolog (yeast)
See related
Ensembl:ENSPREG00000010428
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See nop2 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
16
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG16 NC_024346.1 (12169380..12175893)

Linkage Group LG16 - NC_024346.1Genomic Context describing neighboring genes Neighboring gene histone H1-like Neighboring gene EMG1 N1-specific pseudouridine methyltransferase Neighboring gene inhibitor of growth family, member 4 Neighboring gene non-SMC condensin I complex, subunit D2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024346.1 Chromosome LG16 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA (cytosine-C5-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024346.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    12169380..12175893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008431458.2 → XP_008429680.1  probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1

    See identical proteins and their annotated locations for XP_008429680.1

    UniProtKB/TrEMBL
    A0A3P9P0W9
    Conserved Domains (3) summary
    TIGR00446
    Location:339 → 613
    nop2p; NOL1/NOP2/sun family putative RNA methylase
    pfam01189
    Location:404 → 612
    Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
    pfam17125
    Location:309 → 400
    Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF

  2. XM_008431459.2 → XP_008429681.1  probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X1

    See identical proteins and their annotated locations for XP_008429681.1

    UniProtKB/TrEMBL
    A0A3P9P0W9
    Related
    ENSPREP00000015477.1, ENSPRET00000015634.1
    Conserved Domains (3) summary
    TIGR00446
    Location:339 → 613
    nop2p; NOL1/NOP2/sun family putative RNA methylase
    pfam01189
    Location:404 → 612
    Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
    pfam17125
    Location:309 → 400
    Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF

  3. XM_017309623.1 → XP_017165112.1  probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase isoform X2

Nucleotide Protein
Heading Accession and Version

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