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rhbdf1a rhomboid 5 homolog 1a (Drosophila) [ Poecilia reticulata (guppy) ]

Gene ID: 103468706, updated on 11-Mar-2024

Summary

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Gene symbol
rhbdf1a
Gene description
rhomboid 5 homolog 1a (Drosophila)
See related
Ensembl:ENSPREG00000007670
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
rhbdf1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG8
Exon count:
19
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG8 NC_024338.1 (14964591..14994254)

Linkage Group LG8 - NC_024338.1Genomic Context describing neighboring genes Neighboring gene NPR3-like, GATOR1 complex subunit Neighboring gene N-methylpurine DNA glycosylase Neighboring gene arylalkylamine N-acetyltransferase 2 Neighboring gene mahogunin, ring finger 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024338.1 Chromosome LG8 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive rhomboid protein 1
Names
rhomboid 5 homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024338.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    14964591..14994254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008415954.2 → XP_008414176.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9NP53
    Conserved Domains (4) summary
    TIGR04370
    Location:734 → 867
    glyco_rpt_poly; oligosaccharide repeat unit polymerase
    pfam01694
    Location:692 → 830
    Rhomboid; Rhomboid family
    pfam12595
    Location:129 → 347
    Rhomboid_SP; Rhomboid serine protease
    cl00738
    Location:796 → 867
    MBOAT; MBOAT, membrane-bound O-acyltransferase family

  2. XM_008415952.2 → XP_008414174.1  inactive rhomboid protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9NNZ4, A0A3P9NP53
    Related
    ENSPREP00000011290.1, ENSPRET00000011415.1
    Conserved Domains (4) summary
    TIGR04370
    Location:735 → 868
    glyco_rpt_poly; oligosaccharide repeat unit polymerase
    pfam01694
    Location:693 → 831
    Rhomboid; Rhomboid family
    pfam12595
    Location:130 → 348
    Rhomboid_SP; Rhomboid serine protease
    cl00738
    Location:797 → 868
    MBOAT; MBOAT, membrane-bound O-acyltransferase family

  3. XM_008415955.2 → XP_008414177.1  inactive rhomboid protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3P9NP53
    Related
    ENSPREP00000011343.1, ENSPRET00000011470.1
    Conserved Domains (3) summary
    pfam01694
    Location:657 → 795
    Rhomboid; Rhomboid family
    pfam12595
    Location:94 → 312
    Rhomboid_SP; Rhomboid serine protease
    cl00738
    Location:761 → 832
    MBOAT; MBOAT, membrane-bound O-acyltransferase family
Nucleotide Protein
Heading Accession and Version

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