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lrp5 low density lipoprotein receptor-related protein 5 [ Poecilia reticulata (guppy) ]

Gene ID: 103465774, updated on 11-Mar-2024

Summary

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Gene symbol
lrp5
Gene description
low density lipoprotein receptor-related protein 5
See related
Ensembl:ENSPREG00000006550
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG6
Exon count:
29
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG6 NC_024336.1 (4683974..4743249, complement)

Linkage Group LG6 - NC_024336.1Genomic Context describing neighboring genes Neighboring gene craniofacial development protein 1 Neighboring gene BCAR1 scaffold protein, Cas family member Neighboring gene uncharacterized LOC103465772 Neighboring gene chromosome LG6 open reading frame, human C11orf24 Neighboring gene transmembrane protein 170A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024336.1 Chromosome LG6 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 5
Names
LDL receptor related protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024336.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    4683974..4743249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008410912.2 → XP_008409134.1  low-density lipoprotein receptor-related protein 5

    UniProtKB/TrEMBL
    A0A3P9NJL0, A0A3P9NJT8
    Related
    ENSPREP00000009756.1, ENSPRET00000009872.1
    Conserved Domains (4) summary
    smart00135
    Location:414 → 455
    LY; Low-density lipoprotein-receptor YWTD domain
    cd00112
    Location:1346 → 1380
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam00058
    Location:476 → 516
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:918 → 953
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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