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syn2b synapsin IIb [ Poecilia reticulata (guppy) ]

Gene ID: 103464444, updated on 11-Mar-2024

Summary

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Gene symbol
syn2b
Gene description
synapsin IIb
See related
Ensembl:ENSPREG00000006342
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
syn2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
13
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG5 NC_024335.1 (6927376..6997794, complement)

Linkage Group LG5 - NC_024335.1Genomic Context describing neighboring genes Neighboring gene intermediate filament family orphan 2b Neighboring gene telomeric repeat binding factor 2, interacting protein Neighboring gene peroxisome proliferator-activated receptor gamma Neighboring gene TIMP metallopeptidase inhibitor 4 Neighboring gene TAM41 mitochondrial translocator assembly and maintenance homolog Neighboring gene ATG7 autophagy related 7 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024335.1 Chromosome LG5 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synapsin-2
Names
synapsin II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024335.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    6927376..6997794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008408551.2 → XP_008406773.1  synapsin-2

    UniProtKB/TrEMBL
    A0A3P9NIF2
    Related
    ENSPREP00000009356.1, ENSPRET00000009468.1
    Conserved Domains (4) summary
    pfam02078
    Location:138 → 235
    Synapsin; Synapsin, N-terminal domain
    pfam05466
    Location:502 → 743
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
    pfam10581
    Location:1 → 27
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:237 → 439
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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