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si:dkey-87k14.1 fibronectin leucine rich transmembrane protein 2 [ Poecilia reticulata (guppy) ]

Gene ID: 103458966, updated on 11-Mar-2024

Summary

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Gene symbol
si:dkey-87k14.1
Gene description
fibronectin leucine rich transmembrane protein 2
See related
Ensembl:ENSPREG00000012037
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
flrt2
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG22
Exon count:
2
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG22 NC_024352.1 (20686989..20691788)

Linkage Group LG22 - NC_024352.1Genomic Context describing neighboring genes Neighboring gene GTPase IMAP family member 7-like Neighboring gene microsomal glutathione S-transferase 1 Neighboring gene uncharacterized LOC103458967 Neighboring gene uncharacterized LOC103458965 Neighboring gene goosecoid

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024352.1 Chromosome LG22 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat transmembrane protein FLRT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024352.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    20686989..20691788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008400124.2 → XP_008398346.1  leucine-rich repeat transmembrane protein FLRT2

    UniProtKB/TrEMBL
    A0A3P9P7V4
    Related
    ENSPREP00000017788.1, ENSPRET00000017978.1
    Conserved Domains (7) summary
    smart00013
    Location:36 → 61
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:310 → 358
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:112 → 288
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:66 → 89
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 110
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:416 → 487
    fn3; Fibronectin type III domain
    pfam13855
    Location:254 → 311
    LRR_8; Leucine rich repeat
Nucleotide Protein
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