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supt20 SPT20 homolog, SAGA complex component [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103395480, updated on 11-Mar-2024

Summary

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Gene symbol
supt20
Gene description
SPT20 homolog, SAGA complex component
See related
Ensembl:ENSCSEG00000019177
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
supt20h
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
25
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 19 NC_024325.1 (14282387..14294404, complement)

Chromosome 19 - NC_024325.1Genomic Context describing neighboring genes Neighboring gene interleukin 2 receptor subunit gamma Neighboring gene solute carrier family 9 member 6b Neighboring gene uncharacterized LOC107990038 Neighboring gene exosome component 8 Neighboring gene U1 spliceosomal RNA Neighboring gene UDP-glucuronosyltransferase 1-2-like Neighboring gene UDP-glucuronosyltransferase 2C1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024325.1 Chromosome 19 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog
Names
suppressor of Ty 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024325.1 Reference Cse_v1.0 Primary Assembly

    Range
    14282387..14294404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025065704.1 → XP_024921472.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  2. XM_025065702.1 → XP_024921470.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  3. XM_025065701.1 → XP_024921469.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  4. XM_025065703.1 → XP_024921471.1  transcription factor SPT20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  5. XM_025065706.1 → XP_024921474.1  transcription factor SPT20 homolog isoform X5

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  6. XM_025065707.1 → XP_024921475.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Related
    ENSCSEP00000029917.1, ENSCSET00000030319.1
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family

  7. XM_025065705.1 → XP_024921473.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A3P8WTT2
    Conserved Domains (1) summary
    pfam12090
    Location:62 → 215
    Spt20; Spt20 family
Nucleotide Protein
Heading Accession and Version

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