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adamtsl1 ADAMTS like 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103390374, updated on 22-Oct-2023

Summary

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Gene symbol
adamtsl1
Gene description
ADAMTS like 1
See related
Ensembl:ENSCSEG00000009122
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
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Genomic context

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Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 1 NC_024307.1 (31072252..31155483, complement)

Chromosome 1 - NC_024307.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene La ribonucleoprotein 7, transcriptional regulator Neighboring gene uncharacterized LOC112486953 Neighboring gene perilipin 2 Neighboring gene cell division cycle associated 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024307.1 Chromosome 1 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADAMTS-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024307.1 Reference Cse_v1.0 Primary Assembly

    Range
    31072252..31155483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025055092.1 → XP_024910860.1  ADAMTS-like protein 1 isoform X6

    Conserved Domains (6) summary
    smart00408
    Location:919 → 975
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:73 → 119
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:223 → 333
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1482 → 1512
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:1191 → 1251
    Ig; Immunoglobulin domain
    cl15278
    Location:767 → 818
    TSP_1; Thrombospondin type 1 domain

  2. XM_008326225.3 → XP_008324447.1  ADAMTS-like protein 1 isoform X3

    Conserved Domains (7) summary
    smart00408
    Location:919 → 975
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:73 → 119
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:920 → 986
    IG_like; Immunoglobulin like
    pfam05986
    Location:223 → 333
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1483 → 1513
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:1191 → 1251
    Ig; Immunoglobulin domain
    cl15278
    Location:767 → 818
    TSP_1; Thrombospondin type 1 domain

  3. XM_008326211.3 → XP_008324433.1  ADAMTS-like protein 1 isoform X1

    Conserved Domains (7) summary
    smart00408
    Location:936 → 992
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:73 → 119
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:937 → 1003
    IG_like; Immunoglobulin like
    pfam05986
    Location:223 → 333
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1500 → 1530
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:1208 → 1268
    Ig; Immunoglobulin domain
    cl15278
    Location:784 → 835
    TSP_1; Thrombospondin type 1 domain

  4. XM_008326217.3 → XP_008324439.1  ADAMTS-like protein 1 isoform X2

    Conserved Domains (7) summary
    smart00408
    Location:936 → 992
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:73 → 119
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:937 → 1003
    IG_like; Immunoglobulin like
    pfam05986
    Location:223 → 333
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1499 → 1529
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:1208 → 1268
    Ig; Immunoglobulin domain
    cl15278
    Location:784 → 835
    TSP_1; Thrombospondin type 1 domain

  5. XM_008326231.3 → XP_008324453.1  ADAMTS-like protein 1 isoform X4

    Conserved Domains (7) summary
    smart00408
    Location:896 → 952
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:33 → 79
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:897 → 963
    IG_like; Immunoglobulin like
    pfam05986
    Location:183 → 293
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1460 → 1490
    PLAC; PLAC (protease and lacunin) domain
    cl11960
    Location:1168 → 1228
    Ig; Immunoglobulin domain
    cl15278
    Location:744 → 795
    TSP_1; Thrombospondin type 1 domain

  6. XM_008326238.2 → XP_008324460.1  ADAMTS-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3P8VIW2
    Related
    ENSCSEP00000014204.1, ENSCSET00000014371.1
    Conserved Domains (2) summary
    smart00209
    Location:73 → 119
    TSP1; Thrombospondin type 1 repeats
    pfam05986
    Location:223 → 333
    ADAM_spacer1; ADAM-TS Spacer 1
Nucleotide Protein
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