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sntb1 syntrophin, basic 1 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103388451, updated on 11-Mar-2024

Summary

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Gene symbol
sntb1
Gene description
syntrophin, basic 1
See related
Ensembl:ENSCSEG00000005142
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 13 NC_024319.1 (9391247..9430488, complement)

Chromosome 13 - NC_024319.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase type IVA 3 Neighboring gene zinc finger and AT-hook domain containing Neighboring gene MDM2 binding protein Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene collagen, type XIV, alpha 1a Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024319.1 Chromosome 13 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1-syntrophin
Names
syntrophin beta 1
syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024319.1 Reference Cse_v1.0 Primary Assembly

    Range
    9391247..9430488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008323423.3 → XP_008321645.1  beta-1-syntrophin

    UniProtKB/TrEMBL
    A0A3P8UXU9, A0A3P8V1N1
    Related
    ENSCSEP00000007999.1, ENSCSET00000008085.1
    Conserved Domains (5) summary
    smart00233
    Location:324 → 433
    PH; Pleckstrin homology domain
    cd00992
    Location:103 → 184
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd01258
    Location:244 → 301
    PHsplit_syntrophin; Syntrophin Split Pleckstrin homology (PH) domain
    pfam00169
    Location:324 → 433
    PH; PH domain
    cl17171
    Location:16 → 47
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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