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xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103377331, updated on 11-Mar-2024

Summary

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Gene symbol
xrcc2
Gene description
X-ray repair complementing defective repair in Chinese hamster cells 2
See related
Ensembl:ENSCSEG00000018549
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 3 NC_024309.1 (11497002..11499714, complement)

Chromosome 3 - NC_024309.1Genomic Context describing neighboring genes Neighboring gene protein kinase AMP-activated non-catalytic subunit gamma 2 Neighboring gene histone-lysine N-methyltransferase 2C Neighboring gene uncharacterized LOC103377333 Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Neighboring gene chondrolectin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024309.1 Chromosome 3 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables four-way junction DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA strand invasion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein XRCC2
Names
X-ray repair cross complementing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024309.1 Reference Cse_v1.0 Primary Assembly

    Range
    11497002..11499714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017031775.2 → XP_016887264.1  DNA repair protein XRCC2 isoform X3

  2. XM_017031774.2 → XP_016887263.1  DNA repair protein XRCC2 isoform X2

  3. XM_008308123.3 → XP_008306345.3  DNA repair protein XRCC2 isoform X1

    UniProtKB/TrEMBL
    A0A3P8WR50
    Related
    ENSCSEP00000028962.1, ENSCSET00000029359.1
    Conserved Domains (1) summary
    cl28885
    Location:58 → 224
    RecA-like_NTPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and ...
Nucleotide Protein
Heading Accession and Version

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