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prdm12b PR domain containing 12b [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103376126, updated on 11-Mar-2024

Summary

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Gene symbol
prdm12b
Gene description
PR domain containing 12b
See related
Ensembl:ENSSPAG00000018824
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Also known as
prdm12
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007581405.1 (17226..20314, complement)

NW_007581405.1Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene uncharacterized LOC103376125 Neighboring gene far upstream element (FUSE) binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007581405 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 12
Names
PR/SET domain 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007581405.1 Reference Stegastes_partitus-1.0.2

    Range
    17226..20314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008306494.1 → XP_008304716.1  PR domain zinc finger protein 12

    UniProtKB/TrEMBL
    A0A3B5AU06, A0A9Y4TYJ6
    Related
    ENSSPAP00000024908.1, ENSSPAT00000025318.1
    Conserved Domains (5) summary
    COG5048
    Location:261 → 311
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:262 → 282
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:261 → 282
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:100 → 204
    SET; SET domain
    pfam13465
    Location:274 → 299
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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