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snrnp200 small nuclear ribonucleoprotein 200 (U5) [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103356607, updated on 11-Mar-2024

Summary

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Gene symbol
snrnp200
Gene description
small nuclear ribonucleoprotein 200 (U5)
See related
Ensembl:ENSSPAG00000001842
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See snrnp200 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
44
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577942.1 (64883..78814)

NW_007577942.1Genomic Context describing neighboring genes Neighboring gene transmembrane channel-like 1 Neighboring gene zinc finger, AN1-type domain 5a Neighboring gene cytosolic iron-sulfur assembly component 1 Neighboring gene transmembrane protein 127 Neighboring gene glutamine amidotransferase class 1 domain containing 3, like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577942 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 200 kDa helicase
Names
small nuclear ribonucleoprotein U5 subunit 200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577942.1 Reference Stegastes_partitus-1.0.2

    Range
    64883..78814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008280831.1 → XP_008279053.1  U5 small nuclear ribonucleoprotein 200 kDa helicase

    UniProtKB/TrEMBL
    A0A3B4Z7I6, A0A3B4ZLH7
    Related
    ENSSPAP00000002527.1, ENSSPAT00000002565.1
    Conserved Domains (7) summary
    smart00490
    Location:1614 → 1692
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:1318 → 1505
    DEXDc; DEAD-like helicases superfamily
    smart00611
    Location:1807 → 2121
    SEC63; Domain of unknown function in Sec63p, Brr2p and other proteins
    COG1204
    Location:442 → 1239
    BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
    cd00079
    Location:682 → 868
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:480 → 659
    DEAD; DEAD/DEAH box helicase
    pfam02889
    Location:980 → 1283
    Sec63; Sec63 Brl domain
Nucleotide Protein
Heading Accession and Version

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