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vps11 VPS11 core subunit of CORVET and HOPS complexes [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103356039, updated on 11-Mar-2024

Summary

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Gene symbol
vps11
Gene description
VPS11 core subunit of CORVET and HOPS complexes
See related
Ensembl:ENSSPAG00000001005
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007577911.1 (147454..157484, complement)

NW_007577911.1Genomic Context describing neighboring genes Neighboring gene zona pellucida like domain containing 1 Neighboring gene hypoxia up-regulated 1 Neighboring gene BBX high mobility group box domain containing Neighboring gene discs, large homolog 2 (Drosophila)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007577911 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in organelle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 11 homolog
Names
VPS11, CORVET/HOPS core subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007577911.1 Reference Stegastes_partitus-1.0.2

    Range
    147454..157484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008280082.1 → XP_008278304.1  vacuolar protein sorting-associated protein 11 homolog

    UniProtKB/TrEMBL
    A0A3B4Z4R9, A0A9Y4JLB3
    Related
    ENSSPAP00000001644.1, ENSSPAT00000001674.1
    Conserved Domains (7) summary
    smart00299
    Location:408 → 531
    CLH; Clathrin heavy chain repeat homology
    COG2319
    Location:55 → 372
    WD40; WD40 repeat [General function prediction only]
    cd00162
    Location:743 → 782
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam00637
    Location:414 → 533
    Clathrin; Region in Clathrin and VPS
    pfam12451
    Location:784 → 829
    VPS11_C; Vacuolar protein sorting protein 11 C terminal
    sd00039
    Location:83 → 133
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:44 → 191
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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