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ALKBH1 alkB homolog 1, histone H2A dioxygenase [ Eptesicus fuscus (big brown bat) ]

Gene ID: 103283534, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH1
Gene description
alkB homolog 1, histone H2A dioxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Eptesicus fuscus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Vespertilionidae; Eptesicus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current DD_ASM_mEF_20220401 (GCF_027574615.1) 5 NC_072477.1 (19862145..19884490)
101 previous assembly EptFus1.0 (GCF_000308155.1) Unplaced Scaffold NW_007370659.1 (1447728..1473291)

Chromosome 5 - NC_072477.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM14-like Neighboring gene SNW domain containing 1 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene serine palmitoyltransferase long chain base subunit 2 Neighboring gene isthmin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables broad specificity oxidative DNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ferrous iron binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidative RNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oxidative RNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleic acid dioxygenase ALKBH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027574615.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DD_ASM_mEF_20220401

Genomic

  1. NC_072477.1 Reference DD_ASM_mEF_20220401

    Range
    19862145..19884490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054715866.1 → XP_054571841.1  nucleic acid dioxygenase ALKBH1 isoform X1

  2. XM_054715868.1 → XP_054571843.1  nucleic acid dioxygenase ALKBH1 isoform X2

  3. XM_054715867.1 → XP_054571842.1  nucleic acid dioxygenase ALKBH1 isoform X2

Nucleotide Protein
Heading Accession and Version

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