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LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103255282, updated on 11-Mar-2024

Summary

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Gene symbol
LSM6
Gene description
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
See related
Ensembl:ENSTSYG00000026972
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007232084.1 (313756..327577, complement)

NW_007232084.1Genomic Context describing neighboring genes Neighboring gene sodium/bile acid cotransporter 7 Neighboring gene ubiquitin-like domain-containing CTD phosphatase 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007232084 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007232084.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    313756..327577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008053247.1 → XP_008051438.1  U6 snRNA-associated Sm-like protein LSm6 isoform X2

    See identical proteins and their annotated locations for XP_008051438.1

    UniProtKB/TrEMBL
    A0A1U7T0X9
    Related
    ENSTSYP00000031164.1, ENSTSYT00000030693.1
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6

  2. XM_021710063.1 → XP_021565738.1  U6 snRNA-associated Sm-like protein LSm6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0DVH0
    Conserved Domains (1) summary
    cd01726
    Location:7 → 69
    LSm6; Like-Sm protein 6

  3. XM_021710064.1 → XP_021565739.1  U6 snRNA-associated Sm-like protein LSm6 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0DVH0
    Conserved Domains (1) summary
    cd01726
    Location:7 → 69
    LSm6; Like-Sm protein 6

  4. XM_021710066.1 → XP_021565741.1  U6 snRNA-associated Sm-like protein LSm6 isoform X2

    UniProtKB/TrEMBL
    A0A1U7T0X9
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version

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