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PCDH18 protocadherin 18 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103236269, updated on 11-Mar-2024

Summary

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Gene symbol
PCDH18
Gene description
protocadherin 18
See related
Ensembl:ENSCSAG00000003551
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666037.1 (63976269..63989176, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 7 NC_023648.1 (84509271..84522975, complement)

NW_023666037.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S23-like Neighboring gene U4 spliceosomal RNA Neighboring gene solute carrier family 7 member 11 Neighboring gene uncharacterized LOC103236272

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666037.1 Reference Vero_WHO_p1.0

    Range
    63976269..63989176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007999804.2 → XP_007997995.2  protocadherin-18 isoform X2

    UniProtKB/TrEMBL
    A0A0D9S0W0
    Conserved Domains (2) summary
    cd11304
    Location:470 → 572
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:32 → 111
    Cadherin_2; Cadherin-like

  2. XM_007999803.2 → XP_007997994.2  protocadherin-18 isoform X1

    UniProtKB/TrEMBL
    A0A0D9S0W0
    Conserved Domains (2) summary
    cd11304
    Location:470 → 572
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:32 → 111
    Cadherin_2; Cadherin-like

  3. XM_037992059.1 → XP_037847987.1  protocadherin-18 isoform X4

    UniProtKB/TrEMBL
    A0A0D9S0W0
    Conserved Domains (1) summary
    cd11304
    Location:250 → 352
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_037992060.1 → XP_037847988.1  protocadherin-18 isoform X5

    UniProtKB/TrEMBL
    A0A0D9S0W0
    Conserved Domains (1) summary
    cd11304
    Location:250 → 352
    Cadherin_repeat; Cadherin tandem repeat domain

  5. XM_007999805.2 → XP_007997996.2  protocadherin-18 isoform X3

    UniProtKB/TrEMBL
    A0A0D9S0W0
    Conserved Domains (2) summary
    cd11304
    Location:470 → 572
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:32 → 111
    Cadherin_2; Cadherin-like
Nucleotide Protein
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