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COL4A4 collagen type IV alpha 4 chain [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103217992, updated on 11-Mar-2024

Summary

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Gene symbol
COL4A4
Gene description
collagen type IV alpha 4 chain
See related
Ensembl:ENSCSAG00000007607
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
48
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666040.1 (86269741..86423511)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 10 NC_023651.1 (113028552..113183240, complement)

NW_023666040.1Genomic Context describing neighboring genes Neighboring gene mitochondrial fission factor Neighboring gene collagen type IV alpha 3 chain Neighboring gene small nucleolar RNA SNORA48 Neighboring gene rhomboid domain containing 1 Neighboring gene insulin receptor substrate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666040.1 Reference Vero_WHO_p1.0

    Range
    86269741..86423511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038001450.1 → XP_037857378.1  collagen alpha-4(IV) chain

    UniProtKB/TrEMBL
    A0A0D9R530
    Conserved Domains (2) summary
    pfam01391
    Location:829 → 880
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1468 → 1572
    C4; C-terminal tandem repeated domain in type 4 procollagen

RNA

  1. XR_005241413.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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