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LDB3 LIM domain binding 3 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103215876, updated on 11-Mar-2024

Summary

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Gene symbol
LDB3
Gene description
LIM domain binding 3
See related
Ensembl:ENSCSAG00000009684
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See LDB3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666048.1 (5238400..5307738, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 9 NC_023650.1 (45130015..45199585, complement)

NW_023666048.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor type 1A Neighboring gene putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 Neighboring gene translation initiation factor IF-2-like Neighboring gene 60S ribosomal protein L7a-like Neighboring gene opsin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables muscle alpha-actinin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM domain-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666048.1 Reference Vero_WHO_p1.0

    Range
    5238400..5307738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038008963.1 → XP_037864891.1  LIM domain-binding protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A0D9RBE6
    Conserved Domains (6) summary
    cd09362
    Location:571 → 622
    LIM2_Enigma_like; The second LIM domain of Enigma-like family
    cd09363
    Location:630 → 683
    LIM3_Enigma_like; The third LIM domain of Enigma-like family
    cd09454
    Location:512 → 563
    LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
    PHA03247
    Location:249 → 513
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:148 → 249
    DUF4749; Domain of unknown function (DUF4749)

  2. XM_038008961.1 → XP_037864889.1  LIM domain-binding protein 3 isoform X2

    Conserved Domains (6) summary
    cd09362
    Location:555 → 606
    LIM2_Enigma_like; The second LIM domain of Enigma-like family
    cd09363
    Location:614 → 667
    LIM3_Enigma_like; The third LIM domain of Enigma-like family
    cd09454
    Location:496 → 547
    LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
    PHA03247
    Location:93 → 494
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:194 → 296
    DUF4749; Domain of unknown function (DUF4749)

  3. XM_038008960.1 → XP_037864888.1  LIM domain-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RBE6
    Conserved Domains (6) summary
    cd09362
    Location:618 → 669
    LIM2_Enigma_like; The second LIM domain of Enigma-like family
    cd09363
    Location:677 → 730
    LIM3_Enigma_like; The third LIM domain of Enigma-like family
    cd09454
    Location:559 → 610
    LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
    PHA03247
    Location:93 → 561
    PHA03247; large tegument protein UL36; Provisional
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:194 → 296
    DUF4749; Domain of unknown function (DUF4749)

  4. XM_038008962.1 → XP_037864890.1  LIM domain-binding protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A0D9RBE6
    Conserved Domains (8) summary
    smart00735
    Location:189 → 214
    ZM; ZASP-like motif
    cd09362
    Location:623 → 674
    LIM2_Enigma_like; The second LIM domain of Enigma-like family
    cd09363
    Location:682 → 735
    LIM3_Enigma_like; The third LIM domain of Enigma-like family
    cd09454
    Location:564 → 615
    LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
    COG3456
    Location:30 → 224
    COG3456; Predicted component of the type VI protein secretion system, contains a FHA domain [Signal transduction mechanisms, Intracellular trafficking, secretion, and vesicular transport]
    PRK12323
    Location:280 → 563
    PRK12323; DNA polymerase III subunit gamma/tau
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:263 → 364
    DUF4749; Domain of unknown function (DUF4749)

  5. XM_038008965.1 → XP_037864893.1  LIM domain-binding protein 3 isoform X6

    Conserved Domains (2) summary
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:194 → 296
    DUF4749; Domain of unknown function (DUF4749)

  6. XM_038008964.1 → XP_037864892.1  LIM domain-binding protein 3 isoform X5

    Conserved Domains (3) summary
    smart00735
    Location:189 → 214
    ZM; ZASP-like motif
    cd00992
    Location:5 → 81
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15936
    Location:263 → 364
    DUF4749; Domain of unknown function (DUF4749)
Nucleotide Protein
Heading Accession and Version

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