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COL8A1 collagen type VIII alpha 1 chain [ Orycteropus afer afer ]

Gene ID: 103201160, updated on 11-Mar-2024

Summary

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Gene symbol
COL8A1
Gene description
collagen type VIII alpha 1 chain
Gene type
protein coding
RefSeq status
MODEL
Organism
Orycteropus afer afer (sub-species: afer)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tubulidentata; Orycteropodidae; Orycteropus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current OryAfe1.0 (GCF_000298275.1) Unplaced Scaffold NW_006921730.1 (6153964..6162958, complement)

NW_006921730.1Genomic Context describing neighboring genes Neighboring gene cms1 ribosomal small subunit homolog Neighboring gene transcription initiation factor TFIID subunit 12-like Neighboring gene filamin A interacting protein 1 like Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006921730 Unplaced Scaffold Reference OryAfe1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(VIII) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Orycteropus afer afer Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OryAfe1.0 Primary Assembly

Genomic

  1. NW_006921730.1 Reference OryAfe1.0 Primary Assembly

    Range
    6153964..6162958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007945791.2 → XP_007943982.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A8B7A7P4, A0A8B7A974
    Conserved Domains (2) summary
    smart00110
    Location:610 → 745
    C1Q; Complement component C1q domain
    pfam01391
    Location:424 → 482
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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