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ddx56 DEAD (Asp-Glu-Ala-Asp) box helicase 56 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187794, updated on 11-Mar-2024

Summary

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Gene symbol
ddx56
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 56
See related
Ensembl:ENSCMIG00000010148
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704769.1 (4162910..4170411)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890239.1 (593030..600238)

NW_024704769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103187829 Neighboring gene uncharacterized LOC121851023 Neighboring gene NPC1-like 1 Neighboring gene LIM domain-binding protein 1-like Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX56
Names
DEAD-box helicase 56
putative ATP-dependent RNA helicase DDX56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704769.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    4162910..4170411
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007907449.2 → XP_007905640.2  probable ATP-dependent RNA helicase DDX56

    UniProtKB/TrEMBL
    V9KLR2
    Conserved Domains (2) summary
    COG0513
    Location:5 → 493
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd17961
    Location:13 → 217
    DEADc_DDX56; DEAD-box helicase domain of DEAD box protein 56
Nucleotide Protein
Heading Accession and Version

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