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tbc1d7 TBC1 domain family, member 7 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103187040, updated on 11-Mar-2024

Summary

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Gene symbol
tbc1d7
Gene description
TBC1 domain family, member 7
See related
Ensembl:ENSCMIG00000007966
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (12585770..12617508)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890213.1 (339143..371343)

NW_024704743.1Genomic Context describing neighboring genes Neighboring gene Ras homolog, mTORC1 binding Neighboring gene gamma-crystallin N Neighboring gene phosphatase and actin regulator 1 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene endothelin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 7
Names
TBC1 domain family member 7-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    12585770..12617508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007906367.2 → XP_007904558.1  TBC1 domain family member 7 isoform X1

    See identical proteins and their annotated locations for XP_007904558.1

    UniProtKB/TrEMBL
    A0A4W3I689
    Conserved Domains (1) summary
    cl02495
    Location:146 → 222
    RabGAP-TBC; Rab-GTPase-TBC domain

  2. XM_007906368.2 → XP_007904559.1  TBC1 domain family member 7 isoform X2

    UniProtKB/TrEMBL
    A0A4W3I683, V9KP96
    Related
    ENSCMIP00000016539.1
    Conserved Domains (1) summary
    cl02495
    Location:146 → 250
    RabGAP-TBC; Rab-GTPase-TBC domain

  3. XM_007906370.2 → XP_007904561.1  TBC1 domain family member 7 isoform X4

    UniProtKB/TrEMBL
    A0A4W3HMN8, V9KP96
    Related
    ENSCMIP00000016540.1
    Conserved Domains (1) summary
    cl02495
    Location:119 → 223
    RabGAP-TBC; Rab-GTPase-TBC domain

  4. XM_007906364.2 → XP_007904555.1  TBC1 domain family member 7 isoform X1

    See identical proteins and their annotated locations for XP_007904555.1

    UniProtKB/TrEMBL
    A0A4W3I689
    Conserved Domains (1) summary
    cl02495
    Location:146 → 222
    RabGAP-TBC; Rab-GTPase-TBC domain

  5. XM_007906371.2 → XP_007904562.1  TBC1 domain family member 7 isoform X5

    UniProtKB/TrEMBL
    A0A4W3I689
    Related
    ENSCMIP00000016544.1
    Conserved Domains (1) summary
    cl02495
    Location:146 → 222
    RabGAP-TBC; Rab-GTPase-TBC domain

  6. XM_007906369.2 → XP_007904560.1  TBC1 domain family member 7 isoform X3

    UniProtKB/TrEMBL
    A0A4W3I689
    Conserved Domains (1) summary
    cl02495
    Location:119 → 195
    RabGAP-TBC; Rab-GTPase-TBC domain

  7. XM_007906366.2 → XP_007904557.1  TBC1 domain family member 7 isoform X1

    See identical proteins and their annotated locations for XP_007904557.1

    UniProtKB/TrEMBL
    A0A4W3I689
    Conserved Domains (1) summary
    cl02495
    Location:146 → 222
    RabGAP-TBC; Rab-GTPase-TBC domain
Nucleotide Protein
Heading Accession and Version

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