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sall3a spalt-like transcription factor 3a [ Callorhinchus milii (elephant shark) ]

Gene ID: 103183234, updated on 7-Dec-2023

Summary

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Gene symbol
sall3a
Gene description
spalt-like transcription factor 3a
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
sall3
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Genomic context

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See sall3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (84652585..84684532)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890133.1 (3023790..3034130)

NW_024704743.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103183225 Neighboring gene uncharacterized LOC121848166 Neighboring gene ATPase phospholipid transporting 9B Neighboring gene nuclear factor of activated T cells 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: sal-like protein 3
Names
spalt like transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    84652585..84684532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042332296.1 → XP_042188230.1  LOW QUALITY PROTEIN: sal-like protein 3

    UniProtKB/TrEMBL
    A0A4W3HPN4
    Conserved Domains (3) summary
    smart00355
    Location:759 → 781
    ZnF_C2H2; zinc finger
    cd11674
    Location:1032 → 1093
    lambda-1; inner capsid protein lambda-1 or VP3
    sd00017
    Location:701 → 721
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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