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utp15 UTP15 small subunit processome component [ Callorhinchus milii (elephant shark) ]

Gene ID: 103182708, updated on 11-Mar-2024

Summary

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Gene symbol
utp15
Gene description
UTP15 small subunit processome component
See related
Ensembl:ENSCMIG00000008674
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (116091676..116110998)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890126.1 (3863768..3883204)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene low-density lipoprotein receptor class A domain-containing protein 1-like Neighboring gene ankyrin repeat, family A (RFXANK-like), 2 Neighboring gene rho guanine nucleotide exchange factor 28-like Neighboring gene Rho guanine nucleotide exchange factor (GEF) 28a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 15 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    116091676..116110998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042334692.1 → XP_042190626.1  U3 small nucleolar RNA-associated protein 15 homolog

    UniProtKB/TrEMBL
    A0A4W3HMN9, V9KPN7
    Conserved Domains (3) summary
    cd00200
    Location:39 → 307
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 491
    UTP15_C; UTP15 C terminal

  2. XM_007899807.2 → XP_007897998.1  U3 small nucleolar RNA-associated protein 15 homolog

    See identical proteins and their annotated locations for XP_007897998.1

    UniProtKB/TrEMBL
    A0A4W3HMN9, V9KPN7
    Related
    ENSCMIP00000018443.1
    Conserved Domains (3) summary
    cd00200
    Location:39 → 307
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:41 → 79
    7WD40; WD40 repeat [structural motif]
    pfam09384
    Location:344 → 491
    UTP15_C; UTP15 C terminal
Nucleotide Protein
Heading Accession and Version

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