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plxna4 plexin A4 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103176948, updated on 11-Mar-2024

Summary

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Gene symbol
plxna4
Gene description
plexin A4
See related
Ensembl:ENSCMIG00000011743
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704746.1 (64776440..65072780)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890070.1 (934891..1218348, complement)

NW_024704746.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 4 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 3a Neighboring gene cell wall protein DAN4 Neighboring gene podocalyxin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell shape IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of semaphorin receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plexin-A4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704746.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    64776440..65072780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042335956.1 → XP_042191890.1  plexin-A4 isoform X2

    UniProtKB/TrEMBL
    A0A4W3ILU3
    Conserved Domains (9) summary
    cd01179
    Location:946 → 1031
    IPT_plexin_repeat2; Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01180
    Location:850 → 944
    IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    cd01181
    Location:1033 → 1133
    IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
    pfam01437
    Location:501 → 549
    PSI; Plexin repeat
    pfam01833
    Location:1151 → 1219
    TIG; IPT/TIG domain
    pfam08337
    Location:1304 → 1857
    Plexin_cytopl; Plexin cytoplasmic RasGAP domain
    pfam17960
    Location:556 → 646
    TIG_plexin; TIG domain
    pfam18020
    Location:701 → 794
    TIG_2; TIG domain found in plexin
    cl15693
    Location:32 → 503
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_042335955.1 → XP_042191889.1  plexin-A4 isoform X1

    Conserved Domains (1) summary
    cl15693
    Location:32 → 449
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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