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zbtb42 zinc finger and BTB domain containing 42 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103175284, updated on 11-Mar-2024

Summary

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Gene symbol
zbtb42
Gene description
zinc finger and BTB domain containing 42
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704750.1 (6786042..6791863)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890062.1 (10319296..10324837, complement)

NW_024704750.1Genomic Context describing neighboring genes Neighboring gene SIVA1, apoptosis-inducing factor Neighboring gene v-akt murine thymoma viral oncogene homolog 1 Neighboring gene centrosomal protein 170Ba Neighboring gene 5'-3' exonuclease PLD3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 18.2
Names
zinc finger protein 238.2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704750.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    6786042..6791863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007888241.2 → XP_007886432.2  zinc finger and BTB domain-containing protein 18.2

    UniProtKB/TrEMBL
    V9KX27
    Conserved Domains (3) summary
    COG5048
    Location:381 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins

  2. XM_007888239.2 → XP_007886430.2  zinc finger and BTB domain-containing protein 18.2

    UniProtKB/TrEMBL
    V9KX27
    Conserved Domains (3) summary
    COG5048
    Location:381 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins

  3. XM_007888238.2 → XP_007886429.2  zinc finger and BTB domain-containing protein 18.2

    UniProtKB/TrEMBL
    V9KX27
    Conserved Domains (3) summary
    COG5048
    Location:381 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins

  4. XM_007888240.2 → XP_007886431.2  zinc finger and BTB domain-containing protein 18.2

    UniProtKB/TrEMBL
    V9KX27
    Conserved Domains (3) summary
    COG5048
    Location:381 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins

  5. XM_042338314.1 → XP_042194248.1  zinc finger and BTB domain-containing protein 18.2

    UniProtKB/TrEMBL
    V9KX27
    Conserved Domains (3) summary
    COG5048
    Location:381 → 454
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385 → 405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18325
    Location:1 → 128
    BTB_POZ_ZBTB18_2-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 18.2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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