U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC103172214 cysteine protease ATG4D [ Callorhinchus milii (elephant shark) ]

Gene ID: 103172214, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC103172214
Gene description
cysteine protease ATG4D
See related
Ensembl:ENSCMIG00000003857
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
atg4d
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704770.1 (3119827..3126429, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006891817.1 (5423..10359)

NW_024704770.1Genomic Context describing neighboring genes Neighboring gene crumbs homolog 3a Neighboring gene transmembrane protein 205 Neighboring gene F-box/LRR-repeat protein 12 Neighboring gene ferredoxin 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cysteine protease ATG4D
Names
autophagy related 4D cysteine peptidase
cysteine protease ATG4D-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704770.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    3119827..3126429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007885015.2 → XP_007883206.2  cysteine protease ATG4D

    UniProtKB/TrEMBL
    A0A4W3GVA0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.