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Sdf4 stromal cell derived factor 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 103159168, updated on 11-Mar-2024

Summary

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Gene symbol
Sdf4
Gene description
stromal cell derived factor 4
Locus tag
I79_018191
See related
Ensembl:ENSCGRG00015015298
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
calumenin
Orthologs
human mouse all
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Genomic context

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See Sdf4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614798.1 (191341..205441, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (304330..318570, complement)

NW_003614798.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene TNF receptor superfamily member 4 Neighboring gene beta-1,3-galactosyltransferase 6 Neighboring gene C1q and TNF related 12 Neighboring gene ubiquitin conjugating enzyme E2 J2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium-ion regulated exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
45 kDa calcium-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614798.1 Reference CriGri_1.0 Primary Assembly

    Range
    191341..205441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007650625.4 → XP_007648815.1  45 kDa calcium-binding protein isoform X2

    See identical proteins and their annotated locations for XP_007648815.1

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41
    Conserved Domains (3) summary
    PTZ00184
    Location:229 → 340
    PTZ00184; calmodulin; Provisional
    pfam13499
    Location:102 → 162
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:101 → 160
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_007650626.4 → XP_007648816.1  45 kDa calcium-binding protein isoform X2

    See identical proteins and their annotated locations for XP_007648816.1

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41
    Conserved Domains (3) summary
    PTZ00184
    Location:229 → 340
    PTZ00184; calmodulin; Provisional
    pfam13499
    Location:102 → 162
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:101 → 160
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_016979466.3 → XP_016834955.1  45 kDa calcium-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A061IF41, A0A9J7FD94
    Conserved Domains (3) summary
    PTZ00184
    Location:232 → 343
    PTZ00184; calmodulin; Provisional
    pfam13499
    Location:105 → 165
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:104 → 163
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_027441840.2 → XP_027297641.1  45 kDa calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    304330..318570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027398604.2 → XP_027254405.1  45 kDa calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41
    Related
    ENSCGRP00015049528.1, ENSCGRT00015076782.1

  2. XM_027398605.2 → XP_027254406.1  45 kDa calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41

  3. XM_027398603.2 → XP_027254404.1  45 kDa calcium-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A061IF41, A0A9J7FD94
    Related
    ENSCGRP00015019982.2, ENSCGRT00015024603.2

  4. XM_027398606.2 → XP_027254407.1  45 kDa calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A061IE40, A0A061IF41
Nucleotide Protein Strain
Heading Accession and Version

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