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herc4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103156981, updated on 11-Mar-2024

Summary

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Gene symbol
herc4
Gene description
HECT and RLD domain containing E3 ubiquitin protein ligase 4
See related
Ensembl:ENSPFOG00000013186
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800452.1 (45213..55993, complement)

NW_006800452.1Genomic Context describing neighboring genes Neighboring gene fidgetin-like 1 Neighboring gene tubulin tyrosine ligase Neighboring gene cytochrome c oxidase subunit 5B, mitochondrial-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene family with sequence similarity 83 member Ha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800452.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable E3 ubiquitin-protein ligase HERC4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800452.1 Reference Poecilia_formosa-5.1.2

    Range
    45213..55993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016664805.1 → XP_016520291.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A087Y5H7
    Conserved Domains (3) summary
    smart00119
    Location:725 → 1044
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:699 → 1044
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam00415
    Location:208 → 257
    RCC1; Regulator of chromosome condensation (RCC1) repeat

  2. XM_016664806.1 → XP_016520292.1  probable E3 ubiquitin-protein ligase HERC4 isoform X2

  3. XM_007579233.2 → XP_007579295.1  probable E3 ubiquitin-protein ligase HERC4 isoform X1

    UniProtKB/TrEMBL
    A0A087Y5H7
    Related
    ENSPFOP00000013280.2, ENSPFOT00000013298.2
    Conserved Domains (3) summary
    smart00119
    Location:725 → 1044
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:699 → 1044
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam00415
    Location:208 → 257
    RCC1; Regulator of chromosome condensation (RCC1) repeat
Nucleotide Protein
Heading Accession and Version

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