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ptbp1a polypyrimidine tract binding protein 1a [ Poecilia formosa (Amazon molly) ]

Gene ID: 103146521, updated on 11-Mar-2024

Summary

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Gene symbol
ptbp1a
Gene description
polypyrimidine tract binding protein 1a
See related
Ensembl:ENSPFOG00000010578
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
ptbp1
Orthologs
zebrafish all
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Genomic context

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See ptbp1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800099.1 (232185..247856, complement)

NW_006800099.1Genomic Context describing neighboring genes Neighboring gene spectrin, beta, erythrocytic Neighboring gene synaptosomal-associated protein 23-like Neighboring gene ephrin-A2a Neighboring gene paralemmin 1b Neighboring gene phospholipid phosphatase related 3a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800099.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1
Names
polypyrimidine tract binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800099.1 Reference Poecilia_formosa-5.1.2

    Range
    232185..247856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007564493.2 → XP_007564555.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A087XYF8, A0A096M8X6
    Related
    ENSPFOP00000010811.2, ENSPFOT00000010827.2
    Conserved Domains (3) summary
    cd12693
    Location:195 → 290
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    TIGR01649
    Location:71 → 577
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:384 → 476
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_007564492.2 → XP_007564554.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A096M8X6
    Conserved Domains (3) summary
    cd12693
    Location:194 → 289
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    TIGR01649
    Location:70 → 576
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:383 → 475
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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