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afg2b AFG2 AAA ATPase homolog B [ Poecilia formosa (Amazon molly) ]

Gene ID: 103146160, updated on 11-Mar-2024

Summary

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Gene symbol
afg2b
Gene description
AFG2 AAA ATPase homolog B
See related
Ensembl:ENSPFOG00000005380
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
spata5l1
Orthologs
human zebrafish all
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Genomic context

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See afg2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800092.1 (524212..529378)

NW_006800092.1Genomic Context describing neighboring genes Neighboring gene NAD(P) transhydrogenase, mitochondrial-like Neighboring gene NAD(P) transhydrogenase, mitochondrial-like Neighboring gene normal mucosa of esophagus-specific gene 1 protein Neighboring gene normal mucosa of esophagus-specific gene 1 protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800092.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 5-like protein 1
Names
spermatogenesis associated 5-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800092.1 Reference Poecilia_formosa-5.1.2

    Range
    524212..529378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007563944.2 → XP_007564006.1  spermatogenesis-associated protein 5-like protein 1

    UniProtKB/TrEMBL
    A0A087XHV4
    Related
    ENSPFOP00000005357.2, ENSPFOT00000005366.2
    Conserved Domains (2) summary
    TIGR01243
    Location:4 → 743
    CDC48; AAA family ATPase, CDC48 subfamily
    pfam00004
    Location:228 → 359
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
Heading Accession and Version

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