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usp42 ubiquitin specific peptidase 42 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103142721, updated on 11-Mar-2024

Summary

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Gene symbol
usp42
Gene description
ubiquitin specific peptidase 42
See related
Ensembl:ENSPFOG00000013796
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799943.1 (1152398..1167663)

NW_006799943.1Genomic Context describing neighboring genes Neighboring gene PMS1 homolog 2, mismatch repair system component Neighboring gene eukaryotic translation initiation factor 2-alpha kinase 1 Neighboring gene ankyrin repeat domain 61 Neighboring gene angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 Neighboring gene distal-less homeobox 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799943.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799943.1 Reference Poecilia_formosa-5.1.2

    Range
    1152398..1167663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007558903.2 → XP_007558965.1  ubiquitin carboxyl-terminal hydrolase 42

    UniProtKB/TrEMBL
    A0A087Y702
    Related
    ENSPFOP00000013805.1, ENSPFOT00000013824.1
    Conserved Domains (2) summary
    cd02661
    Location:111 → 410
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:112 → 409
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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