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TTC39B tetratricopeptide repeat domain 39B [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103125076, updated on 11-Mar-2024

Summary

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Gene symbol
TTC39B
Gene description
tetratricopeptide repeat domain 39B
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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See TTC39B in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 10 NC_080171.1 (49833014..49973923, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006803949.1 (6767478..6915496)

Chromosome 10 - NC_080171.1Genomic Context describing neighboring genes Neighboring gene cerberus 1, DAN family BMP antagonist Neighboring gene FRAS1 related extracellular matrix 1 Neighboring gene polyadenylate-binding protein-interacting protein 1-like Neighboring gene small nuclear RNA activating complex polypeptide 3 Neighboring gene PC4 and SRSF1 interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cholesterol storage IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cholesterol efflux IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cholesterol metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080171.1 Reference mEriEur2.1

    Range
    49833014..49973923 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016193696.2 → XP_016049182.1  LOW QUALITY PROTEIN: tetratricopeptide repeat protein 39B

    UniProtKB/TrEMBL
    A0A1S3WSC3
    Conserved Domains (2) summary
    pfam10300
    Location:141 → 597
    DUF3808; Protein of unknown function (DUF3808)
    pfam13424
    Location:591 → 657
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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