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C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103121994, updated on 11-Mar-2024

Summary

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Gene symbol
C1GALT1
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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See C1GALT1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 8 NC_080169.1 (48211187..48249516, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804525.1 (191434..224341, complement)

Chromosome 8 - NC_080169.1Genomic Context describing neighboring genes Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene ribonucleoside-diphosphate reductase subunit M2-like Neighboring gene uncharacterized LOC132539901 Neighboring gene uncharacterized LOC132539899 Neighboring gene uncharacterized LOC132539776 Neighboring gene asparagine synthetase (glutamine-hydrolyzing)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080169.1 Reference mEriEur2.1

    Range
    48211187..48249516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016192316.2 → XP_016047802.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3AC07, A0A1S3WND8
    Conserved Domains (1) summary
    cl21608
    Location:115 → 256
    Galactosyl_T; Galactosyltransferase

  2. XM_016192317.2 → XP_016047803.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3AC07, A0A1S3WN50
    Conserved Domains (1) summary
    cl21608
    Location:107 → 248
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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