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HDAC6 histone deacetylase 6 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103119175, updated on 6-Jun-2024

Summary

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Gene symbol
HDAC6
Gene description
histone deacetylase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) X NC_080185.1 (89580663..89605891, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804350.1 (774330..799316)

Chromosome X - NC_080185.1Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 1 inhibitor Neighboring gene ES cell expressed Ras Neighboring gene U5 spliceosomal RNA Neighboring gene GATA binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080185.1 Reference mEriEur2.1

    Range
    89580663..89605891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060183637.1 → XP_060039620.1  histone deacetylase 6 isoform X1

    UniProtKB/TrEMBL
    A0A1S3WJ98

  2. XM_060183639.1 → XP_060039622.1  histone deacetylase 6 isoform X3

    UniProtKB/TrEMBL
    A0A1S3WJ91

  3. XM_060183638.1 → XP_060039621.1  histone deacetylase 6 isoform X2

    UniProtKB/TrEMBL
    A0A1S3WJJ0

  4. XM_060183635.1 → XP_060039618.1  histone deacetylase 6 isoform X1

    UniProtKB/TrEMBL
    A0A1S3WJ98
Nucleotide Protein
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Gene LinkOut

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