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COCH cochlin [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103107997, updated on 11-Mar-2024

Summary

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Gene symbol
COCH
Gene description
cochlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 16 NC_080177.1 (61490779..61503417, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006803984.1 (3161358..3173680, complement)

Chromosome 16 - NC_080177.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132533467 Neighboring gene HECT domain E3 ubiquitin protein ligase 1 Neighboring gene adaptor related protein complex 4 subunit sigma 1 Neighboring gene striatin 3 Neighboring gene small ribosomal subunit protein eS27-like Neighboring gene large ribosomal subunit protein eL39-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cochlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080177.1 Reference mEriEur2.1

    Range
    61490779..61503417 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060175248.1 → XP_060031231.1  cochlin

    UniProtKB/TrEMBL
    A0A1S2ZBP6

  2. XM_016185453.2 → XP_016040939.1  cochlin

    UniProtKB/TrEMBL
    A0A1S2ZBP6
    Conserved Domains (3) summary
    smart00603
    Location:33 → 115
    LCCL; LCCL domain
    cd01472
    Location:369 → 530
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    cd01482
    Location:167 → 331
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
Nucleotide Protein
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