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BBX BBX high mobility group box domain containing [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103083103, updated on 11-Mar-2024

Summary

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Gene symbol
BBX
Gene description
BBX high mobility group box domain containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006776646.1 (1625749..1908363, complement)

NW_006776646.1Genomic Context describing neighboring genes Neighboring gene mitochondrial intermembrane space import and assembly protein 40-like Neighboring gene CD47 molecule Neighboring gene chromodomain Y-like protein-like Neighboring gene coiled-coil domain containing 54 Neighboring gene mitochondrial import inner membrane translocase subunit Tim17-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006776646 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006776646.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1625749..1908363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007450540.1 → XP_007450602.1  HMG box transcription factor BBX

    UniProtKB/TrEMBL
    A0A340WSM1
    Conserved Domains (3) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam09667
    Location:191 → 302
    DUF2028; Domain of unknown function (DUF2028)
    cl17562
    Location:299 → 373
    Spore_III_AF; Stage III sporulation protein AF (Spore_III_AF)

  2. XM_007450539.1 → XP_007450601.1  HMG box transcription factor BBX

    UniProtKB/TrEMBL
    A0A340WPA4
    Conserved Domains (3) summary
    cd01388
    Location:79 → 150
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam09667
    Location:191 → 302
    DUF2028; Domain of unknown function (DUF2028)
    cl17562
    Location:299 → 373
    Spore_III_AF; Stage III sporulation protein AF (Spore_III_AF)
Nucleotide Protein
Heading Accession and Version

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