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PHC2 polyhomeotic homolog 2 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103077048, updated on 11-Mar-2024

Summary

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Gene symbol
PHC2
Gene description
polyhomeotic homolog 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006796548.1 (1664278..1713696, complement)

NW_006796548.1Genomic Context describing neighboring genes Neighboring gene skin secretory protein xP2-like Neighboring gene zinc finger protein 362 Neighboring gene alpha 1,3-galactosyltransferase 2 Neighboring gene toll-like receptor 12-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006796548 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PRC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyhomeotic-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006796548.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1664278..1713696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007468705.1 → XP_007468767.1  polyhomeotic-like protein 2

    UniProtKB/TrEMBL
    A0A340Y8L5
    Conserved Domains (3) summary
    cd09577
    Location:762 → 830
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    smart00454
    Location:764 → 831
    SAM; Sterile alpha motif
    pfam16616
    Location:643 → 761
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2

  2. XM_007468703.1 → XP_007468765.1  polyhomeotic-like protein 2

    UniProtKB/TrEMBL
    A0A340YBG6
    Conserved Domains (3) summary
    cd09577
    Location:791 → 859
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    smart00454
    Location:793 → 860
    SAM; Sterile alpha motif
    pfam16616
    Location:672 → 790
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2

  3. XM_007468704.1 → XP_007468766.1  polyhomeotic-like protein 2

    UniProtKB/TrEMBL
    A0A340Y4Z6
    Conserved Domains (3) summary
    cd09577
    Location:790 → 858
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    smart00454
    Location:792 → 859
    SAM; Sterile alpha motif
    pfam16616
    Location:671 → 789
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2

  4. XM_007468706.1 → XP_007468768.1  polyhomeotic-like protein 2

    UniProtKB/TrEMBL
    A0A340Y6B4
    Conserved Domains (2) summary
    cd09577
    Location:254 → 322
    SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
    pfam16616
    Location:135 → 254
    PHC2_SAM_assoc; Unstructured region on Polyhomeotic-like protein 1 and 2
Nucleotide Protein
Heading Accession and Version

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