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ZSCAN16 zinc finger and SCAN domain containing 16 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103074473, updated on 11-Mar-2024

Summary

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Gene symbol
ZSCAN16
Gene description
zinc finger and SCAN domain containing 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006774518.1 (1500802..1507665, complement)

NW_006774518.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein with KRAB and SCAN domains 8-like Neighboring gene zinc finger protein with KRAB and SCAN domains 8-like Neighboring gene zinc finger and SCAN domain-containing protein 23-like Neighboring gene zinc finger protein 165

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006774518 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and SCAN domain-containing protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006774518.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1500802..1507665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007449255.1 → XP_007449317.1  zinc finger and SCAN domain-containing protein 16

    UniProtKB/TrEMBL
    A0A340WNU7
    Conserved Domains (6) summary
    smart00431
    Location:36 → 146
    SCAN; leucine rich region
    COG5048
    Location:234 → 322
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:237 → 257
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:235 → 257
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:37 → 124
    SCAN; SCAN domain
    pfam13465
    Location:249 → 274
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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