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SOX17 SRY-box transcription factor 17 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103073334, updated on 11-Mar-2024

Summary

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Gene symbol
SOX17
Gene description
SRY-box transcription factor 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006790942.1 (3672122..3674673)

NW_006790942.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L15 Neighboring gene TP53RK binding protein pseudogene Neighboring gene uncharacterized LOC103082242 Neighboring gene synapsin-1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006790942 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-17
Names
SRY-box 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006790942.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    3672122..3674673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007464031.1 → XP_007464093.1  transcription factor SOX-17

    UniProtKB/TrEMBL
    A0A340XRZ9
    Conserved Domains (2) summary
    cd01388
    Location:69 → 138
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12067
    Location:201 → 403
    Sox_C_TAD; Sox C-terminal transactivation domain
Nucleotide Protein
Heading Accession and Version

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