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ATM ATM serine/threonine kinase [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103070327, updated on 11-Mar-2024

Summary

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Gene symbol
ATM
Gene description
ATM serine/threonine kinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006771840.1 (235643..378513)

NW_006771840.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10a-like Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene nuclear protein, ataxia-telangiectasia locus Neighboring gene ADP-ribosylation factor 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006771840 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine-protein kinase ATM

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006771840.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    235643..378513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007447216.1 → XP_007447278.1  serine-protein kinase ATM

    See identical proteins and their annotated locations for XP_007447278.1

    UniProtKB/TrEMBL
    A0A340WCK4
    Conserved Domains (4) summary
    cd05171
    Location:2685 → 2964
    PIKKc_ATM; Catalytic domain of Ataxia Telangiectasia Mutated
    pfam02259
    Location:2098 → 2491
    FAT; FAT domain
    pfam02260
    Location:3028 → 3057
    FATC; FATC domain
    pfam11640
    Location:11 → 165
    TAN; Telomere-length maintenance and DNA damage repair

  2. XM_007447215.1 → XP_007447277.1  serine-protein kinase ATM

    See identical proteins and their annotated locations for XP_007447277.1

    UniProtKB/TrEMBL
    A0A340WCK4
    Conserved Domains (4) summary
    cd05171
    Location:2685 → 2964
    PIKKc_ATM; Catalytic domain of Ataxia Telangiectasia Mutated
    pfam02259
    Location:2098 → 2491
    FAT; FAT domain
    pfam02260
    Location:3028 → 3057
    FATC; FATC domain
    pfam11640
    Location:11 → 165
    TAN; Telomere-length maintenance and DNA damage repair
Nucleotide Protein
Heading Accession and Version

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