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ablim1b actin binding LIM protein 1b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103047535, updated on 6-Jun-2024

Summary

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Gene symbol
ablim1b
Gene description
actin binding LIM protein 1b
See related
EnsemblRapid:ENSAMXG00025005126
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
ablim1
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Genomic context

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See ablim1b in Genome Data Viewer
Location:
chromosome: 15
Exon count:
27
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 15 NC_064422.1 (32619184..32713325, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 4 NC_035900.1 (6049001..6147311, complement)

Chromosome 15 - NC_064422.1Genomic Context describing neighboring genes Neighboring gene actin filament associated protein 1-like 2 Neighboring gene kelch repeat and BTB domain-containing protein 13 Neighboring gene actin-binding LIM protein 1-like Neighboring gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial Neighboring gene TruB pseudouridine (psi) synthase family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin binding LIM protein 1b; actin-binding LIM protein 1
Names
actin binding LIM protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430815.1 → NP_001417744.1  actin binding LIM protein 1b isoform 1

    Status: VALIDATED

    Source sequence(s)
    JALAHU010000013
    UniProtKB/TrEMBL
    A0A3B1IIC1

  2. NM_001430816.1 → NP_001417745.1  actin binding LIM protein 1b isoform 2

    Status: VALIDATED

    Source sequence(s)
    JALAHU010000013
    UniProtKB/TrEMBL
    A0A8B9KE41

  3. NM_001430817.1 → NP_001417746.1  actin binding LIM protein 1b isoform 3

    Status: VALIDATED

    Source sequence(s)
    JALAHU010000013
    UniProtKB/TrEMBL
    A0A8B9KGQ1

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064422.1 Reference AstMex3_surface

    Range
    32619184..32713325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049464601.1 → XP_049320558.1  actin-binding LIM protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  2. XM_049464607.1 → XP_049320564.1  actin-binding LIM protein 1 isoform X22

    UniProtKB/TrEMBL
    W5L8T9

  3. XM_049464605.1 → XP_049320562.1  actin-binding LIM protein 1 isoform X20

    UniProtKB/TrEMBL
    A0A3B1J8G0

  4. XM_049464604.1 → XP_049320561.1  actin-binding LIM protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A3B1J8G0

  5. XM_049464599.1 → XP_049320556.1  actin-binding LIM protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A3B1J8G0

  6. XM_049464594.1 → XP_049320551.1  actin-binding LIM protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  7. XM_049464606.1 → XP_049320563.1  actin-binding LIM protein 1 isoform X21

    UniProtKB/TrEMBL
    A0A3B1J8G0

  8. XM_049464602.1 → XP_049320559.1  actin-binding LIM protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A3B1J8G0

  9. XM_049464593.1 → XP_049320550.1  actin-binding LIM protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A3B1J8G0

  10. XM_049464592.1 → XP_049320549.1  actin-binding LIM protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A3B1J8G0

  11. XM_049464591.1 → XP_049320548.1  actin-binding LIM protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  12. XM_049464590.1 → XP_049320547.1  actin-binding LIM protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  13. XM_049464603.1 → XP_049320560.1  actin-binding LIM protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  14. XM_049464598.1 → XP_049320555.1  actin-binding LIM protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A3B1J4Q8
    Related
    ENSAMXP00025007513.1, ENSAMXT00025010037.1

  15. XM_049464597.1 → XP_049320554.1  actin-binding LIM protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  16. XM_049464596.1 → XP_049320553.1  actin-binding LIM protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  17. XM_049464589.1 → XP_049320546.1  actin-binding LIM protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  18. XM_049464588.1 → XP_049320545.1  actin-binding LIM protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  19. XM_049464595.1 → XP_049320552.1  actin-binding LIM protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  20. XM_049464587.1 → XP_049320544.1  actin-binding LIM protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  21. XM_049464586.1 → XP_049320543.1  actin-binding LIM protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B1J4Q8

  22. XM_049464600.1 → XP_049320557.1  actin-binding LIM protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A3B1J4Q8
Nucleotide Protein
Heading Accession and Version

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