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pde1ca phosphodiesterase 1C, calmodulin-dependent a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103040750, updated on 6-Jun-2024

Summary

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Gene symbol
pde1ca
Gene description
phosphodiesterase 1C, calmodulin-dependent a
See related
EnsemblRapid:ENSAMXG00025035844
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
pde1c
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 6 NC_064413.1 (35914436..36051880, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 10 NC_035906.1 (14333960..14490419, complement)

Chromosome 6 - NC_064413.1Genomic Context describing neighboring genes Neighboring gene ITPR interacting domain containing 1 Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene vimentin Neighboring gene tRNA aspartic acid methyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dual specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A
Names
phosphodiesterase 1C, calmodulin-dependent 70kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064413.1 Reference AstMex3_surface

    Range
    35914436..36051880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022673623.2 → XP_022529344.2  dual specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    UniProtKB/TrEMBL
    A0A3B1K695
    Related
    ENSAMXP00025061903.1, ENSAMXT00025078461.1

  2. XM_049480127.1 → XP_049336084.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X2

    UniProtKB/TrEMBL
    A0A3B1K695
    Related
    ENSAMXP00025061864.1, ENSAMXT00025078374.1

  3. XM_049480128.1 → XP_049336085.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X5

    UniProtKB/TrEMBL
    A0A8B9LRT8
    Related
    ENSAMXP00025061827.1, ENSAMXT00025078325.1

  4. XM_022673625.2 → XP_022529346.2  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X4

    UniProtKB/TrEMBL
    A0A3B1K218
    Related
    ENSAMXP00025061897.1, ENSAMXT00025078447.1

  5. XM_022673624.2 → XP_022529345.2  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A isoform X1

    UniProtKB/TrEMBL
    A0A3B1K218
Nucleotide Protein
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