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sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103040188, updated on 6-Jun-2024

Summary

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Gene symbol
sema6a
Gene description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
See related
EnsemblRapid:ENSAMXG00025038793
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See sema6a in Genome Data Viewer
Location:
chromosome: 12
Exon count:
19
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 12 NC_064419.1 (36970658..37085405)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 6 NC_035902.1 (9085038..9203129)

Chromosome 12 - NC_064419.1Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (17-beta) dehydrogenase 4 Neighboring gene Dmx-like 1 Neighboring gene COMM domain containing 10 Neighboring gene adaptor related protein complex 3 subunit sigma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6A
Names
semaphorin 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064419.1 Reference AstMex3_surface

    Range
    36970658..37085405
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049486014.1 → XP_049341971.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    A0A8B9KZC0
    Related
    ENSAMXP00025067956.1, ENSAMXT00025086586.1

  2. XM_049486015.1 → XP_049341972.1  semaphorin-6A isoform X2

    UniProtKB/TrEMBL
    A0A8B9KZG0
    Related
    ENSAMXP00025067962.1, ENSAMXT00025086592.1
Nucleotide Protein
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